PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_161D3D25E.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 288aa    MW: 32916.9 Da    PI: 9.878
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_161D3D25E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR131.17.6e-1082161190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn Y+ e+GF +r  ks+ +  +++  +++ vC ++gk+e+ +++         +  ++  a +++ + +++ w++t+ +  HnH+
  Traes_4AL_161D3D25E.2  82 DFYNLYSWELGFGIRYGKSRLNA-ERTKGMQEIVCGCSGKPETGNSQ---------SCICEFPALIRLLRASNNSWYITEHRASHNHS 159
                            6*****************99984.4447899*********9987655.........5566667999999999***************9 PP

                   FAR1  89 la 90 
                            ++
  Traes_4AL_161D3D25E.2 160 MS 161
                            85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-682161IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MVFLGWLKWR TKEQLQTDKK VTSVFVLNLR RGPPDGLKDR VPCPSRMSAL EVSILKYAEQ  60
PDKSVVRPEL GLSFDSLGEA YDFYNLYSWE LGFGIRYGKS RLNAERTKGM QEIVCGCSGK  120
PETGNSQSCI CEFPALIRLL RASNNSWYIT EHRASHNHSM SLTMGEKVHW PSHKHIDIYT  180
KHLIKQLREN NVNLGKVYSI VGSFFGSVKK VPFTKRTLRS ICGKISREQA EDDVQKTLEA  240
FADIQANTIA KLILNFFERV AGIRWEVLSL NRQVVAQPEG RGMMRSWD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.14e-92PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
TrEMBLW5DLS60.0W5DLS6_WHEAT; Uncharacterized protein
STRINGBRADI1G32950.17e-92(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.12e-09FAR1-related sequence 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]